PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9511_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 257aa    MW: 29391.5 Da    PI: 5.8899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9511_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-1184125854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  Er RR + N++f+ L+ l+P++     +K + a+i+ +A++YIk+L
  RrC9511_p3  84 TERERRVHFNDRFSILKNLIPNP-----TKSDRASIVGEAIDYIKEL 125
                 59*********************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.75776125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-982131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1184137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-984125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1384140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-1085130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCLYHKSQRK EETFMDVEKG RNIYEEMPCF DPNTSASVTA ESSCFSQVQP PQILVAGSTS  60
NSNISLDVEA SPTPLHQFHI NPPTERERRV HFNDRFSILK NLIPNPTKSD RASIVGEAID  120
YIKELLRTIE EFKMLLEKKK LEEFRSMKKA KTDGEEEEED NRKSKLTEVD VRIIDDEVTI  180
KVVQKKKINC LLFTSKALDQ LKLDLHHVAG RQIGEHYSFL FNAKICEGSC VYASGIADTV  240
MEVLEKHYME AVPTNGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516957e-96AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285927e-96AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057117e-96BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086087e-96BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141141.14e-97PREDICTED: transcription factor bHLH10
RefseqXP_013634648.15e-97PREDICTED: transcription factor bHLH10
SwissprotQ84TK11e-92BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A078FSY85e-97A0A078FSY8_BRANA; BnaC04g42050D protein
TrEMBLA0A0D3C3D55e-97A0A0D3C3D5_BRAOL; Uncharacterized protein
TrEMBLM4DYW44e-97M4DYW4_BRARP; Uncharacterized protein
STRINGBra021711.1-P1e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.12e-83bHLH family protein